USC-OGP 2-DE database Two-dimensional polyacrylamide gel electrophoresis database

USC-OGP 2-DE database  Search by                Maps             Select Remote Interfaces [All Interfaces] SWISS-2DPAGE World-2DPAGE Portal World-2DPAGE Repository Exclude local DBs has only effect if a remote interface is selected

Searching in 'USC-OGP 2-DE database' for entry matching: H2B1N_HUMAN USC-OGP 2-DE database:  H2B1N_HUMAN H2B1N_HUMAN General information about the entry View entry in simple text format Entry name H2B1N_HUMAN Primary accession number Q99877 integrated into USC-OGP 2-DE database on  January 17, 2017 (release 1) 2D Annotations were last modified on January 17, 2017 (version 1) General Annotations were last modified on  April 5, 2017 (version 2) Name and origin of the protein Description RecName: Full=Histone H2B type 1-N; AltName: Full=Histone H2B.d; Short=H2B/d;. Gene name Name=HIST1H2BN Synonyms=H2BFD Annotated species Homo sapiens (Human) [TaxID: 9606] Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. References [1]   2D GEL CHARACTERIZATION Author 1., Author 2. Submitted (Mar-2011) to Current 2D PAGE maps for identified proteins How to interpret a protein UVEAL_MELANOMA_3-10 {UVEAL MELANOMA 3-10} Homo sapiens (Human)   map experimental info   UVEAL_MELANOMA_3-10 MAP LOCATIONS: SPOT OGP-1329: pI=4.39; Mw=16914 Cross-references UniProtKB/Swiss-Prot Q99877; H2B1N_HUMAN. 2D PAGE maps for identified proteins How to interpret a protein map You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw. Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly. Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed. External data extracted from UniProtKB/Swiss-Prot Extracted from UniProtKB/Swiss-Prot, release: 0.0 Entry name H2B1N_HUMAN Primary accession number Q99877 Secondary accession number(s) B2R5L4 Q494S8 Q96FB7 Sequence was last modified on  January 23, 2007 (version 3) Annotations were last modified on  March 15, 2017 (version 163) Name and origin of the protein Description RecName: Full=Histone H2B type 1-N; AltName: Full=Histone H2B.d; Short=H2B/d; Gene name Name=HIST1H2BN Synonyms=H2BFD Encoded on Name=HIST1H2BN; Synonyms=H2BFD Keywords Acetylation; Chromosome; Complete proteome; Direct protein sequencing; DNA-binding; Glycoprotein; Isopeptide bond; Methylation; Nucleosome core; Nucleus; Phosphoprotein; Reference proteome; Ubl conjugation. Copyright Copyrighted by the UniProt Consortium, see http://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License Cross-references EMBL Z83336; CAB05938.1; -; Genomic_DNA EMBL AF531297; AAN06697.1; -; Genomic_DNA EMBL AK312228; BAG35161.1; -; mRNA EMBL Z98744; CAB11418.1; -; Genomic_DNA EMBL CH471081; EAX03114.1; -; Genomic_DNA EMBL BC011372; -; NOT_ANNOTATED_CDS; mRNA EMBL BC101411; AAI01412.1; -; mRNA EMBL BC101412; AAI01413.1; -; mRNA EMBL BC101413; AAI01414.1; -; mRNA CCDS CCDS4633.1; -; . RefSeq NP_003511.1; NM_003520.3; . UniGene Hs.534368; -; . UniGene Hs.673851; -; . ProteinModelPortal Q99877; -; . SMR Q99877; -; . BioGrid 113937; 17; . IntAct Q99877; 10; . MINT MINT-4830444; -; . STRING 9606.ENSP00000380177; -; . iPTMnet Q99877; -; . PhosphoSitePlus Q99877; -; . SwissPalm Q99877; -; . BioMuta HIST1H2BN; -; . DMDM 7387741; -; . MaxQB Q99877; -; . PaxDb Q99877; -; . PeptideAtlas Q99877; -; . PRIDE Q99877; -; . TopDownProteomics Q99877; -; . DNASU 8341; -; . Ensembl ENST00000396980; ENSP00000380177; ENSG00000233822; . Ensembl ENST00000449538; ENSP00000446031; ENSG00000233822; . Ensembl ENST00000612898; ENSP00000483903; ENSG00000233822; . GeneID 8341; -; . KEGG hsa:8341; -; . UCSC uc003njt.2; human; . CTD 8341; -; . DisGeNET 8341; -; . GeneCards HIST1H2BN; -; . HGNC HGNC:4749; HIST1H2BN; . HPA HPA042205; -; . HPA HPA043013; -; . HPA HPA048671; -; . MIM 602801; gene; . neXtProt NX_Q99877; -; . OpenTargets ENSG00000233822; -; . PharmGKB PA29124; -; . eggNOG KOG1744; Eukaryota; . eggNOG ENOG4111NV5; LUCA; . GeneTree ENSGT00760000118976; -; . HOGENOM HOG000231213; -; . HOVERGEN HBG007774; -; . InParanoid Q99877; -; . KO K11252; -; . PhylomeDB Q99877; -; . TreeFam TF300212; -; . Reactome R-HSA-1221632; Meiotic synapsis; . Reactome R-HSA-171306; Packaging Of Telomere Ends; . Reactome R-HSA-201722; Formation of the beta-catenin:TCF transactivating complex; . Reactome R-HSA-212300; PRC2 methylates histones and DNA; . Reactome R-HSA-2299718; Condensation of Prophase Chromosomes; . Reactome R-HSA-2559580; Oxidative Stress Induced Senescence; . Reactome R-HSA-2559582; Senescence-Associated Secretory Phenotype (SASP); . Reactome R-HSA-2559586; DNA Damage/Telomere Stress Induced Senescence; . Reactome R-HSA-3214815; HDACs deacetylate histones; . Reactome R-HSA-3214847; HATs acetylate histones; . Reactome R-HSA-427359; SIRT1 negatively regulates rRNA Expression; . Reactome R-HSA-427389; ERCC6 (CSB) and EHMT2 (G9a) positively regulate rRNA expression; . Reactome R-HSA-427413; NoRC negatively regulates rRNA expression; . Reactome R-HSA-5250924; B-WICH complex positively regulates rRNA expression; . Reactome R-HSA-5334118; DNA methylation; . Reactome R-HSA-5578749; Transcriptional regulation by small RNAs; . Reactome R-HSA-5617472; Activation of anterior HOX genes in hindbrain development during early embryogenesis; . Reactome R-HSA-5625886; Activated PKN1 stimulates transcription of AR (androgen receptor) regulated genes KLK2 and KLK3; . Reactome R-HSA-5689880; Ub-specific processing proteases; . Reactome R-HSA-5693565; Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks; . Reactome R-HSA-5693571; Nonhomologous End-Joining (NHEJ); . Reactome R-HSA-5693607; Processing of DNA double-strand break ends; . Reactome R-HSA-606279; Deposition of new CENPA-containing nucleosomes at the centromere; . Reactome R-HSA-69473; G2/M DNA damage checkpoint; . Reactome R-HSA-73728; RNA Polymerase I Promoter Opening; . Reactome R-HSA-73777; RNA Polymerase I Chain Elongation; . Reactome R-HSA-8866654; E3 ubiquitin ligases ubiquitinate target proteins; . Reactome R-HSA-912446; Meiotic recombination; . Reactome R-HSA-977225; Amyloid fiber formation; . GeneWiki HIST1H2BN; -; . GenomeRNAi 8341; -; . PRO PR:Q99877; -; . Proteomes UP000005640; Chromosome 6; . Bgee ENSG00000233822; -; . CleanEx HS_HIST1H2BN; -; . ExpressionAtlas Q99877; baseline and differential; . Genevisible Q99877; HS; . GO GO:0005829; C:cytosol; IDA:HPA; . GO GO:0070062; C:extracellular exosome; IDA:UniProtKB; . GO GO:0005654; C:nucleoplasm; IDA:HPA; . GO GO:0000786; C:nucleosome; NAS:UniProtKB; . GO GO:0005634; C:nucleus; IDA:UniProtKB; . GO GO:0003677; F:DNA binding; NAS:UniProtKB; . GO GO:0006334; P:nucleosome assembly; NAS:UniProtKB; . GO GO:0016567; P:protein ubiquitination; TAS:Reactome; . Gene3D 1.10.20.10; -; 1; . InterPro IPR009072; Histone-fold; . InterPro IPR007125; Histone_H2A/H2B/H3; . InterPro IPR000558; Histone_H2B; . PANTHER PTHR23428; PTHR23428; 1; . Pfam PF00125; Histone; 1; . PRINTS PR00621; HISTONEH2B; . SMART SM00427; H2B; 1; . SUPFAM SSF47113; SSF47113; 1; . PROSITE PS00357; HISTONE_H2B; 1; .

Gateways to other related servers

• The World-2DPAGE Constellation - Entry point to the world-wide 2-DPAGE resources.
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• World-2DPAGE Portal - A dynamic portal to query simultaneously world-wide gel-based proteomics databases.
• SWISS-2DPAGE - The Geneva Two-dimensional polyacrylamide gel electrophoresis database.
• ExPASy - The resources web server of the Swiss Institute of Bioinformatics

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